Publications

103 entries « 1 of 3 »

2021

Shrestha, Swojani; Singhal, Sonalika; Kalonick, Matthew; Guyer, Rachel; Volkert, Alexis; Somji, Seema; Garrett, Scott H; Sens, Donald A; Singhal, Sandeep K

Role of HRTPT in kidney proximal epithelial cell regeneration: Integrative differential expression and pathway analyses using microarray and scRNA-seq Journal Article

In: J Cell Mol Med, vol. 25, no. 22, pp. 10466–10479, 2021, ISSN: 1582-4934.

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Wu, Xiaojun; Shukla, Rammohan; Alganem, Khaled; Zhang, Xiaolu; Eby, Hunter M; Devine, Emily A; Depasquale, Erica; Reigle, James; Simmons, Micah; Hahn, Margaret K; Au-Yeung, Christy; Asgariroozbehani, Roshanak; Hahn, Chang-Gyu; Haroutunian, Vahram; Meller, Jarek; Meador-Woodruff, James; McCullumsmith, Robert E

Transcriptional profile of pyramidal neurons in chronic schizophrenia reveals lamina-specific dysfunction of neuronal immunity Journal Article

In: Mol Psychiatry, vol. 26, no. 12, pp. 7699–7708, 2021, ISSN: 1476-5578.

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2019

Liu, Gang; Arimilli, Subhashini; Savage, Evan; Prasad, G L

Cigarette smoke preparations, not moist snuff, impair expression of genes involved in immune signaling and cytolytic functions Journal Article

In: Sci Rep, vol. 9, no. 1, pp. 13390, 2019, ISSN: 2045-2322.

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Hoggarth, Zachary E; Osowski, Danyelle B; Slusser-Nore, Andrea; Shrestha, Swojani; Pathak, Prakash; Solseng, Theoren; Garrett, Scott H; Patel, Divyen H; Savage, Evan; Sens, Donald A; Somji, Seema

Enrichment of genes associated with squamous differentiation in cancer initiating cells isolated from urothelial cells transformed by the environmental toxicant arsenite Journal Article

In: Toxicol Appl Pharmacol, vol. 374, pp. 41–52, 2019, ISSN: 1096-0333.

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Gehlhausen, Jeffrey R; Hawley, Eric; Wahle, Benjamin Mark; He, Yongzheng; Edwards, Donna; Rhodes, Steven D; Lajiness, Jacquelyn D; Staser, Karl; Chen, Shi; Yang, Xianlin; Yuan, Jin; Li, Xiaohong; Jiang, Li; Smith, Abbi; Bessler, Waylan; Sandusky, George; Stemmer-Rachamimov, Anat; Stuhlmiller, Timothy J; Angus, Steven P; Johnson, Gary L; Nalepa, Grzegorz; Yates, Charles W; Clapp, D Wade; Park, Su-Jung

A proteasome-resistant fragment of NIK mediates oncogenic NF-κB signaling in schwannomas Journal Article

In: Hum Mol Genet, vol. 28, no. 4, pp. 572–583, 2019, ISSN: 1460-2083.

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2017

Irgebay, Zhazira; Yeszhan, Banu; Sen, Bhaswati; Tuleukhanov, Sultan; Brooks, Ari D; Sensenig, Richard; Orynbayeva, Zulfiya

Danazol alters mitochondria metabolism of fibrocystic breast Mcf10A cells Journal Article

In: Breast, vol. 35, pp. 55–62, 2017, ISSN: 1532-3080.

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Cook, George A; Lavrentyev, Eduard N; Pham, Kevin; Park, Edwards A

Streptozotocin diabetes increases mRNA expression of ketogenic enzymes in the rat heart Journal Article

In: Biochim Biophys Acta Gen Subj, vol. 1861, no. 2, pp. 307–312, 2017, ISSN: 0304-4165.

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2015

Briggs, Christine E; Wang, Yulei; Kong, Benjamin; Woo, Tsung-Ung W; Iyer, Lakshmanan K; Sonntag, Kai C

Midbrain dopamine neurons in Parkinson's disease exhibit a dysregulated miRNA and target-gene network Journal Article

In: Brain Res, vol. 1618, pp. 111–121, 2015, ISSN: 1872-6240.

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2014

Pietersen, Charmaine Y; Mauney, Sarah A; Kim, Susie S; Lim, Maribel P; Rooney, Robert J; Goldstein, Jill M; Petryshen, Tracey L; Seidman, Larry J; Shenton, Martha E; McCarley, Robert W; Sonntag, Kai-C; Woo, Tsung-Ung W

Molecular profiles of pyramidal neurons in the superior temporal cortex in schizophrenia Journal Article

In: J Neurogenet, vol. 28, no. 1-2, pp. 53–69, 2014, ISSN: 1563-5260.

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Fatemi, S Hossein; Reutiman, Teri J; Folsom, Timothy D; Rustan, Oyvind G; Rooney, Robert J; Thuras, Paul D

Downregulation of GABAA receptor protein subunits α6, β2, δ, ε, γ2, θ, and ρ2 in superior frontal cortex of subjects with autism Journal Article

In: J Autism Dev Disord, vol. 44, no. 8, pp. 1833–1845, 2014, ISSN: 1573-3432.

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Kim, Woori; Lee, Yenarae; McKenna, Noah D; Yi, Ming; Simunovic, Filip; Wang, Yulei; Kong, Benjamin; Rooney, Robert J; Seo, Hyemyung; Stephens, Robert M; Sonntag, Kai C

miR-126 contributes to Parkinson's disease by dysregulating the insulin-like growth factor/phosphoinositide 3-kinase signaling Journal Article

In: Neurobiol Aging, vol. 35, no. 7, pp. 1712–1721, 2014, ISSN: 1558-1497.

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Pietersen, Charmaine Y; Mauney, Sarah A; Kim, Susie S; Passeri, Eleonora; Lim, Maribel P; Rooney, Robert J; Goldstein, Jill M; Petreyshen, Tracey L; Seidman, Larry J; Shenton, Martha E; Mccarley, Robert W; Sonntag, Kai-C; Woo, Tsung-Ung W

Molecular profiles of parvalbumin-immunoreactive neurons in the superior temporal cortex in schizophrenia Journal Article

In: J Neurogenet, vol. 28, no. 1-2, pp. 70–85, 2014, ISSN: 1563-5260.

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Murray, Onika T; Wong, Chi C; Vrankova, Kvetoslava; Rigas, Basil

Phospho-sulindac inhibits pancreatic cancer growth: NFATc1 as a drug resistance candidate Journal Article

In: Int J Oncol, vol. 44, no. 2, pp. 521–529, 2014, ISSN: 1791-2423.

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Goldenberg, David M; Rooney, Robert J; Loo, Meiyu; Liu, Donglin; Chang, Chien-Hsing

In-vivo fusion of human cancer and hamster stromal cells permanently transduces and transcribes human DNA Journal Article

In: PLoS One, vol. 9, no. 9, pp. e107927, 2014, ISSN: 1932-6203.

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Garrett, Scott H; Somji, Seema; Sens, Donald A; Zhang, Ke K

Prediction of the number of activated genes in multiple independent Cd(+2)- and As(+3)-induced malignant transformations of human urothelial cells (UROtsa) Journal Article

In: PLoS One, vol. 9, no. 1, pp. e85614, 2014, ISSN: 1932-6203.

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Hall, Rabea A; Liebe, Roman; Hochrath, Katrin; Kazakov, Andrey; Alberts, Rudi; Laufs, Ulrich; Böhm, Michael; Fischer, Hans-Peter; Williams, Robert W; Schughart, Klaus; Weber, Susanne N; Lammert, Frank

Systems genetics of liver fibrosis: identification of fibrogenic and expression quantitative trait loci in the BXD murine reference population Journal Article

In: PLoS One, vol. 9, no. 2, pp. e89279, 2014, ISSN: 1932-6203.

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Tetteh, Antonia Y; Sun, Katherine H; Hung, Chiu-Yueh; Kittur, Farooqahmed S; Ibeanu, Gordon C; Williams, Daniel; Xie, Jiahua

Transcriptional Response of Selenopolypeptide Genes and Selenocysteine Biosynthesis Machinery Genes in Escherichia coli during Selenite Reduction Journal Article

In: Int J Microbiol, vol. 2014, pp. 394835, 2014, ISSN: 1687-918X.

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Cain, Jacob T; Berosik, Matthew A; Snyder, Stephanie D; Crawford, Natalie F; Nour, Shirin I; Schaubhut, Geoffrey J; Darland, Diane C

Shifts in the vascular endothelial growth factor isoforms result in transcriptome changes correlated with early neural stem cell proliferation and differentiation in mouse forebrain Journal Article

In: Dev Neurobiol, vol. 74, no. 1, pp. 63–81, 2014, ISSN: 1932-846X.

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2013

Suzuki, Hideaki; Rodriguez-Uribe, Laura; Xu, Jiannong; Zhang, Jinfa

Transcriptome analysis of cytoplasmic male sterility and restoration in CMS-D8 cotton Journal Article

In: Plant Cell Rep, vol. 32, no. 10, pp. 1531–1542, 2013, ISSN: 1432-203X.

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Fatemi, S H; Folsom, T D; Rooney, R J; Thuras, P D

Expression of GABAA α2-, β1- and ε-receptors are altered significantly in the lateral cerebellum of subjects with schizophrenia, major depression and bipolar disorder Journal Article

In: Transl Psychiatry, vol. 3, pp. e303, 2013, ISSN: 2158-3188.

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Kakarla, Sunitha; Chow, Kevin K H; Mata, Melinda; Shaffer, Donald R; Song, Xiao-Tong; Wu, Meng-Fen; Liu, Hao; Wang, Lisa L; Rowley, David R; Pfizenmaier, Klaus; Gottschalk, Stephen

Antitumor effects of chimeric receptor engineered human T cells directed to tumor stroma Journal Article

In: Mol Ther, vol. 21, no. 8, pp. 1611–1620, 2013, ISSN: 1525-0024.

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Fatemi, S H; Folsom, T D; Rooney, R J; Thuras, P D

mRNA and protein expression for novel GABAA receptors θ and ρ2 are altered in schizophrenia and mood disorders; relevance to FMRP-mGluR5 signaling pathway Journal Article

In: Transl Psychiatry, vol. 3, pp. e271, 2013, ISSN: 2158-3188.

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Matsushima, Hironori; Geng, Shuo; Lu, Ran; Okamoto, Takashi; Yao, Yi; Mayuzumi, Nobuyasu; Kotol, Paul F; Chojnacki, Benjamin J; Miyazaki, Toru; Gallo, Richard L; Takashima, Akira

Neutrophil differentiation into a unique hybrid population exhibiting dual phenotype and functionality of neutrophils and dendritic cells Journal Article

In: Blood, vol. 121, no. 10, pp. 1677–1689, 2013, ISSN: 1528-0020.

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2012

Reinius, Björn; Johansson, Martin M; Radomska, Katarzyna J; Morrow, Edward H; Pandey, Gaurav K; Kanduri, Chandrasekhar; Sandberg, Rickard; Williams, Robert W; Jazin, Elena

Abundance of female-biased and paucity of male-biased somatically expressed genes on the mouse X-chromosome Journal Article

In: BMC Genomics, vol. 13, pp. 607, 2012, ISSN: 1471-2164.

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Rogers, Elizabeth E

Evaluation of Arabidopsis thaliana as a model host for Xylella fastidiosa Journal Article

In: Mol Plant Microbe Interact, vol. 25, no. 6, pp. 747–754, 2012, ISSN: 0894-0282.

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Steinle, Jena J; Zhang, Qiuhua; Thompson, Karin Emmons; Toutounchian, Jordan; Yates, C Ryan; Soderland, Carl; Wang, Fan; Stewart, Clinton F; Haik, Barrett G; Williams, J Scott; Jackson, J Scott; Mandrell, Timothy D; Johnson, Dianna; Wilson, Matthew W

Intra-ophthalmic artery chemotherapy triggers vascular toxicity through endothelial cell inflammation and leukostasis Journal Article

In: Invest Ophthalmol Vis Sci, vol. 53, no. 4, pp. 2439–2445, 2012, ISSN: 1552-5783.

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Xu, Yan-Tong; Robson, Matthew J; Szeszel-Fedorowicz, Wioletta; Patel, Divyen; Rooney, Robert; McCurdy, Christopher R; Matsumoto, Rae R

CM156, a sigma receptor ligand, reverses cocaine-induced place conditioning and transcriptional responses in the brain Journal Article

In: Pharmacol Biochem Behav, vol. 101, no. 1, pp. 174–180, 2012, ISSN: 1873-5177.

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Fatemi, S Hossein; Folsom, Timothy D; Rooney, Robert J; Mori, Susumu; Kornfield, Tess E; Reutiman, Teri J; Kneeland, Rachel E; Liesch, Stephanie B; Hua, Kegang; Hsu, John; Patel, Divyen H

The viral theory of schizophrenia revisited: abnormal placental gene expression and structural changes with lack of evidence for H1N1 viral presence in placentae of infected mice or brains of exposed offspring Journal Article

In: Neuropharmacology, vol. 62, no. 3, pp. 1290–1298, 2012, ISSN: 1873-7064.

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Othumpangat, Sreekumar; Walton, Cheryl; Piedimonte, Giovanni

MicroRNA-221 modulates RSV replication in human bronchial epithelium by targeting NGF expression Journal Article

In: PLoS One, vol. 7, no. 1, pp. e30030, 2012, ISSN: 1932-6203.

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2011

Majumdar, Gipsy; Rooney, Robert J; Johnson, I Maria; Raghow, Rajendra

Panhistone deacetylase inhibitors inhibit proinflammatory signaling pathways to ameliorate interleukin-18-induced cardiac hypertrophy Journal Article

In: Physiol Genomics, vol. 43, no. 24, pp. 1319–1333, 2011, ISSN: 1531-2267.

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Darland, Diane C; Cain, Jacob T; Berosik, Matthew A; Saint-Geniez, Magali; Odens, Patrick W; Schaubhut, Geoffrey J; Frisch, Sarah; Stemmer-Rachamimov, Anat; Darland, Tristan; D'Amore, Patricia A

Vascular endothelial growth factor (VEGF) isoform regulation of early forebrain development Journal Article

In: Dev Biol, vol. 358, no. 1, pp. 9–22, 2011, ISSN: 1095-564X.

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Jones, Richard J; Baladandayuthapani, Veerabhadran; Neelapu, Sattva; Fayad, Luis E; Romaguera, Jorge E; Wang, Michael; Sharma, Rakesh; Yang, Dajun; Orlowski, Robert Z

HDM-2 inhibition suppresses expression of ribonucleotide reductase subunit M2, and synergistically enhances gemcitabine-induced cytotoxicity in mantle cell lymphoma Journal Article

In: Blood, vol. 118, no. 15, pp. 4140–4149, 2011, ISSN: 1528-0020.

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Luzina, Irina G; Lockatell, Virginia; Todd, Nevins W; Highsmith, Kendrick; Keegan, Achsah D; Hasday, Jeffrey D; Atamas, Sergei P

Alternatively spliced variants of interleukin-4 promote inflammation differentially Journal Article

In: J Leukoc Biol, vol. 89, no. 5, pp. 763–770, 2011, ISSN: 1938-3673.

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Bjorklund, Chad C; Ma, Wencai; Wang, Zhi-Qiang; Davis, R Eric; Kuhn, Deborah J; Kornblau, Steven M; Wang, Michael; Shah, Jatin J; Orlowski, Robert Z

Evidence of a role for activation of Wnt/beta-catenin signaling in the resistance of plasma cells to lenalidomide Journal Article

In: J Biol Chem, vol. 286, no. 13, pp. 11009–11020, 2011, ISSN: 1083-351X.

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Curtiss, Jessica; Rodriguez-Uribe, Laura; Stewart, J. McD; Zhang, Jinfa

Identification of differentially expressed genes associated with semigamy in Pima cotton (Gossypium barbadenseL.) through comparative microarray analysis Journal Article

In: BMC Plant Biology, vol. 11, no. 1, pp. 49, 2011, ISSN: 1471-2229.

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Xue, Wei; Cojocaru, Radu I; Dudley, V Joseph; Brooks, Matthew; Swaroop, Anand; Sarthy, Vijay P

Ciliary neurotrophic factor induces genes associated with inflammation and gliosis in the retina: a gene profiling study of flow-sorted, Müller cells Journal Article

In: PLoS One, vol. 6, no. 5, pp. e20326, 2011, ISSN: 1932-6203.

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2010

Orellana, Sandra; Yañez, Mónica; Espinoza, Analía; Verdugo, Isabel; González, Enrique; Ruiz-Lara, Simón; Casaretto, José A

The transcription factor SlAREB1 confers drought, salt stress tolerance and regulates biotic and abiotic stress-related genes in tomato Journal Article

In: Plant Cell Environ, vol. 33, no. 12, pp. 2191–2208, 2010, ISSN: 1365-3040.

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Yu, Lei; Todd, Nevins W; Xing, Lingxiao; Xie, Ying; Zhang, Howard; Liu, Zhenqiu; Fang, Hongbin; Zhang, Jian; Katz, Ruth L; Jiang, Feng

Early detection of lung adenocarcinoma in sputum by a panel of microRNA markers Journal Article

In: Int J Cancer, vol. 127, no. 12, pp. 2870–2878, 2010, ISSN: 1097-0215.

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Xing, Lingxiao; Todd, Nevins W; Yu, Lei; Fang, Hongbin; Jiang, Feng

Early detection of squamous cell lung cancer in sputum by a panel of microRNA markers Journal Article

In: Mod Pathol, vol. 23, no. 8, pp. 1157–1164, 2010, ISSN: 1530-0285.

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Lis, Maciej; Liu, Teresa T; Barker, Katherine S; Rogers, P David; Bobek, Libuse A

Antimicrobial peptide MUC7 12-mer activates the calcium/calcineurin pathway in Candida albicans Journal Article

In: FEMS Yeast Res, vol. 10, no. 5, pp. 579–586, 2010, ISSN: 1567-1364.

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Fatemi, S Hossein; Folsom, Timothy D; Reutiman, Teri J; Braun, Natalie N; Lavergne, Luke G

Levels of phosphodiesterase 4A and 4B are altered by chronic treatment with psychotropic medications in rat frontal cortex Journal Article

In: Synapse, vol. 64, no. 7, pp. 550–555, 2010, ISSN: 1098-2396.

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Singh, R P; Dinesh, R; Elashoff, D; de Vos, S; Rooney, R J; Patel, D; Cava, A La; Hahn, B H

Distinct gene signature revealed in white blood cells, CD4(+) and CD8(+) T cells in (NZBx NZW) F1 lupus mice after tolerization with anti-DNA Ig peptide Journal Article

In: Genes Immun, vol. 11, no. 4, pp. 294–309, 2010, ISSN: 1476-5470.

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Zhu, Jun; Mounzih, Khalid; Chehab, Eric F; Mitro, Nico; Saez, Enrique; Chehab, Farid F

Effects of FoxO4 overexpression on cholesterol biosynthesis, triacylglycerol accumulation, and glucose uptake Journal Article

In: J Lipid Res, vol. 51, no. 6, pp. 1312–1324, 2010, ISSN: 1539-7262.

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Fatemi, S Hossein; Reutiman, Teri J; Folsom, Timothy D; Rooney, Robert J; Patel, Diven H; Thuras, Paul D

mRNA and protein levels for GABAAalpha4, alpha5, beta1 and GABABR1 receptors are altered in brains from subjects with autism Journal Article

In: J Autism Dev Disord, vol. 40, no. 6, pp. 743–750, 2010, ISSN: 1573-3432.

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Wei, Qingqing; Bhatt, Kirti; He, Hong-Zhi; Mi, Qing-Sheng; Haase, Volker H; Dong, Zheng

Targeted deletion of Dicer from proximal tubules protects against renal ischemia-reperfusion injury Journal Article

In: J Am Soc Nephrol, vol. 21, no. 5, pp. 756–761, 2010, ISSN: 1533-3450.

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Parada-Bustamante, Alexis; Orihuela, Pedro A; Ríos, Mariana; Cuevas, Catherina A; Oróstica, Maria Lorena; Velásquez, Luis A; Villalón, Manuel J; Croxatto, Horacio B

A non-genomic signaling pathway shut down by mating changes the estradiol-induced gene expression profile in the rat oviduct Journal Article

In: Reproduction, vol. 139, no. 3, pp. 631–644, 2010, ISSN: 1741-7899.

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Xie, Ying; Todd, Nevins W; Liu, Zhenqiu; Zhan, Min; Fang, Hongbin; Peng, Hong; Alattar, Mohammed; Deepak, Janaki; Stass, Sanford A; Jiang, Feng

Altered miRNA expression in sputum for diagnosis of non-small cell lung cancer Journal Article

In: Lung Cancer, vol. 67, no. 2, pp. 170–176, 2010, ISSN: 1872-8332.

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Callegan, Michelle C.

Checks and balances: the ocular response to infection Journal Article

In: Virulence, vol. 1, no. 4, pp. 222-222, 2010, ISSN: 2150-5608, (12317[PII]).

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2009

Du, Ziyun; Fan, Meiyun; Kim, Jong-Gwan; Eckerle, Dara; Lothstein, Leonard; Wei, Lai; Pfeffer, Lawrence M

Interferon-resistant Daudi cell line with a Stat2 defect is resistant to apoptosis induced by chemotherapeutic agents Journal Article

In: J Biol Chem, vol. 284, no. 41, pp. 27808–27815, 2009, ISSN: 1083-351X.

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Chavez, Deborah; Guerra, Bernadette; Lanford, Robert E

Antiviral activity and host gene induction by tamarin and marmoset interferon-alpha and interferon-gamma in the GBV-B primary hepatocyte culture model Journal Article

In: Virology, vol. 390, no. 2, pp. 186–196, 2009, ISSN: 1096-0341.

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103 entries « 1 of 3 »