GeneChip® Genotyping Analysis Software (GTYPE)
GTYPE along with Chromosome Copy Number Analysis Tool (CNAT) is part of the GeneChip® Mapping Array System, specifically designed to give highly accurate, automated SNP allele calls for the GeneChip Mapping Arrays. GTYPE enables workflows for a variety of SNP mapping applications and allow us to streamline data analysis for projects with thousands of samples.
For use with GeneChip® Mapping Array Sets
SNP allele calling with quality scores
Detection of rare alleles
Batch import for sample annotation, gender identification, and Mendel-error checking
Batch export into tab-delimited, Haploview, MERLIN- and GeneHunter open source software-compatible formats
Advanced SNP filtering by Allele frequency, Hardy-Weinberg Equilibrium, Mendelian-error
Analysis of built-in common SNPs on the100K and 500K arrays
Chromosome Copy Number Analysis Tool (CNAT)
CNAT enables the identification of genome-wide chromosomal gains and losses using the GeneChip® Mapping Array sets. GeneChip® Mapping Array platform uniquely allows us to bring together genotype data and copy number information, resulting in investigators being able to combine allelic information with copy number alterations.